PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf05177g03023.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TCP

Protein Properties

Length: 318aa MW: 33753.8 Da PI: 10.9997

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf05177g03023.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	32.1	4e-10	35	63	3	31
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaar 31 +kk + +++h+kv+gR+RR+R+++ caar Niben101Scf05177g03023.1 35 VKKPPVKDRHSKVDGRGRRIRMPIVCAAR 63 69999**********************98 PP
2	TCP	121.9	7.5e-38	91	188	2	99
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnss 86 ++kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++s s+ +s+ss Niben101Scf05177g03023.1 91 TVKKPPVKDRHSKVDGRGRRIRMPIVCAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTIPASFS-TVSVSVRSSSSS 174 689******************************************************************888.222222222233 PP TCP 87 sgkaaksaa.kskk 99 + ++ sa+ +k+ Niben101Scf05177g03023.1 175 ILTSSISAPlDHKQ 188 33222222212222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	4.3E-7	41	63	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.613	97	151	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	3.1E-34	98	186	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MSTSAEGNGA IIDPHQRQQQ QNPSGGGGTN GALIVKKPPV KDRHSKVDGR GRRIRMPIVC 60 AARXEGNGAI IDPHQRQQQQ NPSGGTNGAL TVKKPPVKDR HSKVDGRGRR IRMPIVCAAR 120 VFQLTRELGH KSDGQTIEWL LRQAEPSIIA ATGTGTIPAS FSTVSVSVRS SSSSILTSSI 180 SAPLDHKQPP SSQPLISSAP FILGKRLRTD DESIENGNKE DVGPAATVVG PTPGFWAVPA 240 RPDFGQVWSF AAAPPEMMAP SSAALSLQSS RFFQQQMGEA SAARVGNYLP MTQGHLNLLA 300 SLSGPPQPSS GRRDDDGR

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00524	DAP	Transfer from AT5G23280	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016444705.1	1e-160	PREDICTED: transcription factor TCP7-like
Swissprot	Q9FMX2	2e-90	TCP7_ARATH; Transcription factor TCP7
TrEMBL	G3BGV4	1e-142	G3BGV4_SOLLC; TCP transcription factor 14
TrEMBL	K4BP74	1e-142	K4BP74_SOLLC; Uncharacterized protein
STRING	Solyc04g009180.1.1	1e-141	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3951	22	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	2e-74	TCP family protein